HL_3JAP_029

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGAUUGAGAGCUCU

Length

14 nucleotides

Bulged bases

3JAP|1|2|G|1242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|A|1235
3JAP|1|2|G|1236
3JAP|1|2|A|1237
3JAP|1|2|U|1238
3JAP|1|2|U|1239
3JAP|1|2|G|1240
3JAP|1|2|A|1241
3JAP|1|2|G|1242
3JAP|1|2|A|1243
3JAP|1|2|G|1244
3JAP|1|2|C|1245
3JAP|1|2|U|1246
3JAP|1|2|C|1247
3JAP|1|2|U|1248

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain d

uS14

Chain f

eS31