HL_3JAP_032

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_032 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1721

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

3JAP|1|2|C|1358
3JAP|1|2|A|1359
3JAP|1|2|C|1360
3JAP|1|2|U|1361
3JAP|1|2|U|1362
3JAP|1|2|G|1363

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain T

eS19