HL_3JAP_036
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 3JAP|1|2|G|1599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAP_036 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.2491
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JAP|1|2|G|1592
3JAP|1|2|U|1593
3JAP|1|2|C|1594
3JAP|1|2|A|1595
3JAP|1|2|U|1596
3JAP|1|2|C|1597
3JAP|1|2|A|1598
3JAP|1|2|G|1599
3JAP|1|2|C|1600
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- uS9
- Chain T
- eS19
- Chain U
- uS10
- Chain d
- uS14
Coloring options: