HL_3JAP_037

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

3JAP|1|2|G|1696, 3JAP|1|2|G|1697, 3JAP|1|2|C|1698, 3JAP|1|2|A|1699, 3JAP|1|2|A|1700, 3JAP|1|2|C|1701, 3JAP|1|2|U|1702, 3JAP|1|2|C|1703, 3JAP|1|2|C|1704, 3JAP|1|2|A|1705, 3JAP|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|G|1688
3JAP|1|2|A|1689
3JAP|1|2|G|1690
3JAP|1|2|A|1691
3JAP|1|2|U|1706
3JAP|1|2|C|1707
3JAP|1|2|U|1708
3JAP|1|2|C|1709
3JAP|1|2|G|1696
3JAP|1|2|G|1697
3JAP|1|2|C|1698
3JAP|1|2|A|1699
3JAP|1|2|A|1700
3JAP|1|2|C|1701
3JAP|1|2|U|1702
3JAP|1|2|C|1703
3JAP|1|2|C|1704
3JAP|1|2|A|1705
3JAP|1|2|U|1706
3JAP|1|2|C|1707
3JAP|1|2|U|1708
*
3JAP|1|2|C|1709

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6