HL_3JAP_040

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

3JAP|1|2|A|451, 3JAP|1|2|U|453, 3JAP|1|2|C|454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_040 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.2728

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3JAP|1|2|U|449
3JAP|1|2|A|450
3JAP|1|2|A|451
3JAP|1|2|U|452
3JAP|1|2|U|453
3JAP|1|2|C|454
3JAP|1|2|A|455

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain Y

eS24