HL_3JAQ_001

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAG(H2U)GGAAG

Length

9 nucleotides

Bulged bases

3JAQ|1|1|G|18, 3JAQ|1|1|G|19, 3JAQ|1|1|A|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_001 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.2488

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|1|C|13
3JAQ|1|1|A|14
3JAQ|1|1|G|15
3JAQ|1|1|H2U|16
3JAQ|1|1|G|18
3JAQ|1|1|G|19
3JAQ|1|1|A|20
3JAQ|1|1|A|21
3JAQ|1|1|G|22

Current chains

Chain 1

Met-tRNAi

Nearby chains

Chain j

eIF2 alpha