HL_3JAQ_007

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

3JAQ|1|2|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_007 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2788

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

3JAQ|1|2|C|189
3JAQ|1|2|C|190
3JAQ|1|2|U|191
3JAQ|1|2|U|192
3JAQ|1|2|U|193
3JAQ|1|2|G|194

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS8