HL_3JAQ_014

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

3JAQ|1|2|A|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_014 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1822

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JAQ|1|2|C|413
3JAQ|1|2|C|414
3JAQ|1|2|A|415
3JAQ|1|2|A|416
3JAQ|1|2|G|417
3JAQ|1|2|G|418

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain o

eIF3a