HL_3JAQ_017

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UACAAUGUAAAUACCUUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|U|516
3JAQ|1|2|A|517
3JAQ|1|2|C|518
3JAQ|1|2|A|519
3JAQ|1|2|A|520
3JAQ|1|2|U|521
3JAQ|1|2|G|522
3JAQ|1|2|U|523
3JAQ|1|2|A|524
3JAQ|1|2|A|525
3JAQ|1|2|A|526
3JAQ|1|2|U|527
3JAQ|1|2|A|528
3JAQ|1|2|C|529
3JAQ|1|2|C|530
3JAQ|1|2|U|531
3JAQ|1|2|U|532
3JAQ|1|2|A|533
3JAQ|1|2|A|534

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain Y

eS24