HL_3JAQ_020

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

3JAQ|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_020 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2144

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3JAQ|1|2|U|764
3JAQ|1|2|G|765
3JAQ|1|2|U|766
3JAQ|1|2|U|767
3JAQ|1|2|C|768
3JAQ|1|2|A|769
3JAQ|1|2|A|770
3JAQ|1|2|A|771
3JAQ|1|2|G|772

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24