HL_3JAQ_030

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUUGAGAGCUC

Length

12 nucleotides

Bulged bases

3JAQ|1|2|G|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|1236
3JAQ|1|2|A|1237
3JAQ|1|2|U|1238
3JAQ|1|2|U|1239
3JAQ|1|2|G|1240
3JAQ|1|2|A|1241
3JAQ|1|2|G|1242
3JAQ|1|2|A|1243
3JAQ|1|2|G|1244
3JAQ|1|2|C|1245
3JAQ|1|2|U|1246
3JAQ|1|2|C|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain d

uS14

Chain f

eS31