HL_3JAQ_033

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_033 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1819

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JAQ|1|2|C|1358
3JAQ|1|2|A|1359
3JAQ|1|2|C|1360
3JAQ|1|2|U|1361
3JAQ|1|2|U|1362
3JAQ|1|2|G|1363

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain T

eS19