HL_3JAQ_034

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGUUUCAAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|1392
3JAQ|1|2|G|1393
3JAQ|1|2|U|1394
3JAQ|1|2|U|1395
3JAQ|1|2|U|1396
3JAQ|1|2|C|1397
3JAQ|1|2|A|1398
3JAQ|1|2|A|1399
3JAQ|1|2|G|1400
3JAQ|1|2|C|1401
3JAQ|1|2|C|1402

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain R

eS17

Chain g

RACK1