HL_3JAQ_038

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

3JAQ|1|2|G|1696, 3JAQ|1|2|G|1697, 3JAQ|1|2|C|1698, 3JAQ|1|2|A|1699, 3JAQ|1|2|A|1700, 3JAQ|1|2|C|1701, 3JAQ|1|2|U|1702, 3JAQ|1|2|C|1703, 3JAQ|1|2|C|1704, 3JAQ|1|2|A|1705, 3JAQ|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|1688
3JAQ|1|2|A|1689
3JAQ|1|2|G|1690
3JAQ|1|2|A|1691
3JAQ|1|2|U|1706
3JAQ|1|2|C|1707
3JAQ|1|2|U|1708
3JAQ|1|2|C|1709
3JAQ|1|2|G|1696
3JAQ|1|2|G|1697
3JAQ|1|2|C|1698
3JAQ|1|2|A|1699
3JAQ|1|2|A|1700
3JAQ|1|2|C|1701
3JAQ|1|2|U|1702
3JAQ|1|2|C|1703
3JAQ|1|2|C|1704
3JAQ|1|2|A|1705
3JAQ|1|2|U|1706
3JAQ|1|2|C|1707
3JAQ|1|2|U|1708
*
3JAQ|1|2|C|1709

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6