HL_3JAQ_040

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCUAACCUGUACUCCUUGUGGGUGCAGGCGAAC

Length

33 nucleotides

Bulged bases

3JAQ|1|2|U|718, 3JAQ|1|2|U|719, 3JAQ|1|2|U|721, 3JAQ|1|2|C|731, 3JAQ|1|2|G|732, 3JAQ|1|2|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|703
3JAQ|1|2|C|704
3JAQ|1|2|U|705
3JAQ|1|2|A|706
3JAQ|1|2|A|707
3JAQ|1|2|C|708
3JAQ|1|2|C|709
3JAQ|1|2|U|710
3JAQ|1|2|G|711
3JAQ|1|2|U|712
3JAQ|1|2|A|713
3JAQ|1|2|C|714
3JAQ|1|2|U|715
3JAQ|1|2|C|716
3JAQ|1|2|C|717
3JAQ|1|2|U|718
3JAQ|1|2|U|719
3JAQ|1|2|G|720
3JAQ|1|2|U|721
3JAQ|1|2|G|722
3JAQ|1|2|G|723
3JAQ|1|2|G|724
3JAQ|1|2|U|725
3JAQ|1|2|G|726
3JAQ|1|2|C|727
3JAQ|1|2|A|728
3JAQ|1|2|G|729
3JAQ|1|2|G|730
3JAQ|1|2|C|731
3JAQ|1|2|G|732
3JAQ|1|2|A|733
3JAQ|1|2|A|734
3JAQ|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4