HL_3JCD_012

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3JCD|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_012 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1721

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JCD|1|A|G|194
3JCD|1|A|A|195
3JCD|1|A|A|196
3JCD|1|A|A|197
3JCD|1|A|C|198
3JCD|1|A|A|199
3JCD|1|A|U|200
3JCD|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28