HL_3JCD_042

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

3JCD|1|A|G|1452, 3JCD|1|A|A|1453, 3JCD|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_042 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1327

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3JCD|1|A|C|1451
3JCD|1|A|G|1452
3JCD|1|A|A|1453
3JCD|1|A|C|1454
3JCD|1|A|G|1455
3JCD|1|A|G|1456
3JCD|1|A|U|1457
3JCD|1|A|U|1458
3JCD|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17