HL_3JCD_061

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_061 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1685

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCD|1|A|G|2303
3JCD|1|A|G|2304
3JCD|1|A|U|2305
3JCD|1|A|C|2306
3JCD|1|A|G|2307
3JCD|1|A|G|2308
3JCD|1|A|A|2309
3JCD|1|A|C|2310
3JCD|1|A|A|2311
3JCD|1|A|U|2312
3JCD|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5