HL_3JCD_082

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_082 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3329

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3JCD|1|a|C|206
3JCD|1|a|C|207
3JCD|1|a|U|208
3JCD|1|a|U|209
3JCD|1|a|C|210
3JCD|1|a|G|211
3JCD|1|a|G|212
3JCD|1|a|G|213

Current chains

Chain a

16S ribosomal RNA

Nearby chains