HL_3JCD_085

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

3JCD|1|a|C|330, 3JCD|1|a|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_085 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1765

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCD|1|a|A|320
3JCD|1|a|A|321
3JCD|1|a|C|322
3JCD|1|a|U|323
3JCD|1|a|G|324
3JCD|1|a|A|325
3JCD|1|a|G|326
3JCD|1|a|A|327
3JCD|1|a|C|328
3JCD|1|a|A|329
3JCD|1|a|C|330
3JCD|1|a|G|331
3JCD|1|a|G|332
3JCD|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20