3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
3JCD|1|a|A|344
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JCD_086 not in the Motif Atlas
Homologous match to HL_5J7L_009
Geometric discrepancy: 0.3142
The information below is about HL_5J7L_009
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

3JCD|1|a|C|342
3JCD|1|a|U|343
3JCD|1|a|A|344
3JCD|1|a|C|345
3JCD|1|a|G|346
3JCD|1|a|G|347

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19

Coloring options:


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