HL_3JCD_118

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_118 not in the Motif Atlas

Geometric match to HL_6UFG_007

Geometric discrepancy: 0.1683

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

3JCD|1|8|A|31
3JCD|1|8|U|32
3JCD|1|8|U|33
3JCD|1|8|G|34
3JCD|1|8|A|35
3JCD|1|8|A|36
3JCD|1|8|A|37
3JCD|1|8|A|38
3JCD|1|8|U|39

Current chains

Chain 8

tRNA

Nearby chains

Chain 7

mRNA

Chain 9

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain i

30S ribosomal protein S9