Loop HL_3JCD

3D structure

PDB id: 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC
Length: 51 nucleotides
Bulged bases: 3JCD|1|A|U|2130, 3JCD|1|A|C|2145, 3JCD|1|A|A|2147, 3JCD|1|A|G|2157, 3JCD|1|A|A|2163, 3JCD|1|A|C|2164, 3JCD|1|A|C|2165, 3JCD|1|A|G|2168, 3JCD|1|A|U|2172
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JCD|1|A|G|2124
3JCD|1|A|G|2125
3JCD|1|A|A|2126
3JCD|1|A|G|2127
3JCD|1|A|G|2128
3JCD|1|A|C|2129
3JCD|1|A|U|2130
3JCD|1|A|U|2131
3JCD|1|A|U|2132
3JCD|1|A|G|2133
3JCD|1|A|A|2134
3JCD|1|A|A|2135
3JCD|1|A|G|2136
3JCD|1|A|U|2137
3JCD|1|A|G|2138
3JCD|1|A|U|2139
3JCD|1|A|G|2140
3JCD|1|A|G|2141
3JCD|1|A|A|2142
3JCD|1|A|C|2143
3JCD|1|A|G|2144
3JCD|1|A|C|2145
3JCD|1|A|C|2146
3JCD|1|A|A|2147
3JCD|1|A|G|2148
3JCD|1|A|U|2149
3JCD|1|A|C|2150
3JCD|1|A|U|2151
3JCD|1|A|G|2152
3JCD|1|A|C|2153
3JCD|1|A|A|2154
3JCD|1|A|U|2155
3JCD|1|A|G|2156
3JCD|1|A|G|2157
3JCD|1|A|A|2158
3JCD|1|A|G|2159
3JCD|1|A|C|2160
3JCD|1|A|C|2161
3JCD|1|A|G|2162
3JCD|1|A|A|2163
3JCD|1|A|C|2164
3JCD|1|A|C|2165
3JCD|1|A|U|2166
3JCD|1|A|U|2167
3JCD|1|A|G|2168
3JCD|1|A|A|2169
3JCD|1|A|A|2170
3JCD|1|A|A|2171
3JCD|1|A|U|2172
3JCD|1|A|A|2173
3JCD|1|A|C|2174

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 5: 50S ribosomal protein L1
Chain k: 30S ribosomal protein S11

HL_3JCD_122