HL_3JCT_011

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.1148

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JCT|1|1|U|382
3JCT|1|1|G|383
3JCT|1|1|A|384
3JCT|1|1|A|385
3JCT|1|1|A|386
3JCT|1|1|A|387

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain b

Nucleolar GTP-binding protein 1