HL_3JCT_034

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

3JCT|1|1|A|1566, 3JCT|1|1|U|1572, 3JCT|1|1|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCT|1|1|G|1565
3JCT|1|1|A|1566
3JCT|1|1|U|1567
3JCT|1|1|U|1568
3JCT|1|1|U|1569
3JCT|1|1|U|1570
3JCT|1|1|A|1571
3JCT|1|1|U|1572
3JCT|1|1|G|1573
3JCT|1|1|C|1574

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain 6

ITS2-1 miscRNA

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53

Chain t

Ribosome biogenesis protein RLP7