HL_3JCT_036

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_036 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0595

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JCT|1|1|G|1634
3JCT|1|1|G|1635
3JCT|1|1|U|1636
3JCT|1|1|A|1637
3JCT|1|1|A|1638
3JCT|1|1|C|1639

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A