HL_3JCT_068

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

3JCT|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_068 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0817

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3JCT|1|1|G|3303
3JCT|1|1|U|3304
3JCT|1|1|A|3305
3JCT|1|1|U|3306
3JCT|1|1|A|3307
3JCT|1|1|C|3308
3JCT|1|1|G|3309
3JCT|1|1|A|3310
3JCT|1|1|C|3311

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A