HL_3JCT_077

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

3JCT|1|1|U|545, 3JCT|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_077 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.4259

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCT|1|1|G|542
3JCT|1|1|C|543
3JCT|1|1|C|544
3JCT|1|1|U|545
3JCT|1|1|C|546
3JCT|1|1|G|547
3JCT|1|1|G|548
3JCT|1|1|U|549

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains