HL_3JD5_004

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCCAUAAACGAAAGUUUGAC

Length

20 nucleotides

Bulged bases

3JD5|1|A|G|202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|G|185
3JD5|1|A|C|186
3JD5|1|A|C|187
3JD5|1|A|A|188
3JD5|1|A|U|189
3JD5|1|A|A|190
3JD5|1|A|A|191
3JD5|1|A|A|192
3JD5|1|A|C|193
3JD5|1|A|G|194
3JD5|1|A|A|195
3JD5|1|A|A|196
3JD5|1|A|A|197
3JD5|1|A|G|198
3JD5|1|A|U|199
3JD5|1|A|U|200
3JD5|1|A|U|201
3JD5|1|A|G|202
3JD5|1|A|A|203
3JD5|1|A|C|204

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain P

28S ribosomal protein S16, mitochondrial

Chain c

28S ribosomal protein S25, mitochondrial

Chain d

28S ribosomal protein S26, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial

Chain p

28S ribosomal protein S18b, mitochondrial