HL_3JD5_009

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAACAG

Length

6 nucleotides

Bulged bases

3JD5|1|A|A|497, 3JD5|1|A|C|499, 3JD5|1|A|A|500

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JD5_009 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.3159

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3JD5|1|A|C|496
3JD5|1|A|A|497
3JD5|1|A|A|498
3JD5|1|A|C|499
3JD5|1|A|A|500
3JD5|1|A|G|501

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain O

28S ribosomal protein S15, mitochondrial

Chain n

Aurora kinase A interacting protein 1