HL_3JD5_019
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CGAUAAACCCCG
- Length
- 12 nucleotides
- Bulged bases
- 3JD5|1|A|C|571
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JD5_019 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2705
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JD5|1|A|C|562
3JD5|1|A|G|563
3JD5|1|A|A|564
3JD5|1|A|U|565
3JD5|1|A|A|566
3JD5|1|A|A|567
3JD5|1|A|A|568
3JD5|1|A|C|569
3JD5|1|A|C|570
3JD5|1|A|C|571
3JD5|1|A|C|572
3JD5|1|A|G|573
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain I
- 28S ribosomal protein S9, mitochondrial
- Chain J
- 28S ribosomal protein S10, mitochondrial
- Chain N
- 28S ribosomal protein S14, mitochondrial
Coloring options: