HL_3JD5_020
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CUAAAAAG
- Length
- 8 nucleotides
- Bulged bases
- 3JD5|1|A|A|632, 3JD5|1|A|A|633, 3JD5|1|A|A|635
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JD5_020 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.242
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JD5|1|A|C|630
3JD5|1|A|U|631
3JD5|1|A|A|632
3JD5|1|A|A|633
3JD5|1|A|A|634
3JD5|1|A|A|635
3JD5|1|A|A|636
3JD5|1|A|G|637
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain F
- 28S ribosomal protein S6, mitochondrial
- Chain b
- 28S ribosomal protein S23, mitochondrial
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