HL_3JD5_022

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGCAUCUAACCCUAUUUAAACGCA

Length

24 nucleotides

Bulged bases

3JD5|1|A|U|879, 3JD5|1|A|A|880, 3JD5|1|A|U|881, 3JD5|1|A|C|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|U|867
3JD5|1|A|G|868
3JD5|1|A|C|869
3JD5|1|A|A|870
3JD5|1|A|U|871
3JD5|1|A|C|872
3JD5|1|A|U|873
3JD5|1|A|A|874
3JD5|1|A|A|875
3JD5|1|A|C|876
3JD5|1|A|C|877
3JD5|1|A|C|878
3JD5|1|A|U|879
3JD5|1|A|A|880
3JD5|1|A|U|881
3JD5|1|A|U|882
3JD5|1|A|U|883
3JD5|1|A|A|884
3JD5|1|A|A|885
3JD5|1|A|A|886
3JD5|1|A|C|887
3JD5|1|A|G|888
3JD5|1|A|C|889
3JD5|1|A|A|890

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain O

28S ribosomal protein S15, mitochondrial

Chain e

28S ribosomal protein S27, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial

Chain n

Aurora kinase A interacting protein 1