HL_3JYV_004

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

3JYV|1|A|U|192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_004 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.2512

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

3JYV|1|A|C|190
3JYV|1|A|C|191
3JYV|1|A|U|192
3JYV|1|A|U|193
3JYV|1|A|U|194
3JYV|1|A|G|195

Current chains

Chain A

18S rRNA

Nearby chains