HL_3JYV_008

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_008 not in the Motif Atlas

Homologous match to HL_9PN5_086

Geometric discrepancy: 0.241

The information below is about HL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.3

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

3JYV|1|A|C|393
3JYV|1|A|C|394
3JYV|1|A|U|395
3JYV|1|A|G|396
3JYV|1|A|A|397
3JYV|1|A|G|398
3JYV|1|A|A|399
3JYV|1|A|A|400
3JYV|1|A|A|401
3JYV|1|A|C|402
3JYV|1|A|G|403
3JYV|1|A|G|404

Current chains

Chain A

18S rRNA

Nearby chains