HL_3JYV_022

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

3JYV|1|A|U|1055, 3JYV|1|A|U|1056, 3JYV|1|A|U|1057, 3JYV|1|A|A|1058, 3JYV|1|A|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|U|1052
3JYV|1|A|U|1053
3JYV|1|A|U|1054
3JYV|1|A|U|1055
3JYV|1|A|U|1056
3JYV|1|A|U|1057
3JYV|1|A|A|1058
3JYV|1|A|A|1059
3JYV|1|A|U|1060
3JYV|1|A|G|1061

Current chains

Chain A

18S rRNA

Nearby chains