HL_3JYV_027

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_027 not in the Motif Atlas

Geometric match to HL_4YAZ_003

Geometric discrepancy: 0.1148

The information below is about HL_4YAZ_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3JYV|1|A|A|1293
3JYV|1|A|G|1294
3JYV|1|A|U|1295
3JYV|1|A|G|1296
3JYV|1|A|A|1297
3JYV|1|A|U|1298

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0(A)

Chain E

40S ribosomal protein S2