HL_3JYV_032
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AGCAUUGUAAUUAUUGCU
- Length
- 18 nucleotides
- Bulged bases
- 3JYV|1|A|G|1546, 3JYV|1|A|C|1547, 3JYV|1|A|U|1549, 3JYV|1|A|U|1550, 3JYV|1|A|U|1555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JYV|1|A|A|1545
3JYV|1|A|G|1546
3JYV|1|A|C|1547
3JYV|1|A|A|1548
3JYV|1|A|U|1549
3JYV|1|A|U|1550
3JYV|1|A|G|1551
3JYV|1|A|U|1552
3JYV|1|A|A|1553
3JYV|1|A|A|1554
3JYV|1|A|U|1555
3JYV|1|A|U|1556
3JYV|1|A|A|1557
3JYV|1|A|U|1558
3JYV|1|A|U|1559
3JYV|1|A|G|1560
3JYV|1|A|C|1561
3JYV|1|A|U|1562
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S18
- Chain N
- 40S ribosomal protein S29(A)
- Chain S
- 40S ribosomal protein S15
- Chain T
- s19e protein
Coloring options: