HL_3JYV_042

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUGGCCGAGAGGUCUUG

Length

18 nucleotides

Bulged bases

3JYV|1|A|A|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|1493
3JYV|1|A|U|1494
3JYV|1|A|U|1495
3JYV|1|A|G|1496
3JYV|1|A|G|1497
3JYV|1|A|C|1498
3JYV|1|A|C|1499
3JYV|1|A|G|1500
3JYV|1|A|A|1501
3JYV|1|A|G|1502
3JYV|1|A|A|1503
3JYV|1|A|G|1504
3JYV|1|A|G|1505
3JYV|1|A|U|1506
3JYV|1|A|C|1507
3JYV|1|A|U|1508
3JYV|1|A|U|1509
3JYV|1|A|G|1510

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S18

Chain S

40S ribosomal protein S15

Chain T

s19e protein