HL_3MXH_002

3D structure

PDB id

3MXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Native structure of a c-di-GMP riboswitch from V. cholerae

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3MXH|1|R|C|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

U1 small nuclear ribonucleoprotein A binding hairpin

Broad Annotation

No text annotation

Motif group

HL_33074.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3MXH|1|R|C|65
3MXH|1|R|A|660
3MXH|1|R|U|661
3MXH|1|R|U|662
3MXH|1|R|G|663
3MXH|1|R|C|664
3MXH|1|R|A|665
3MXH|1|R|C|666
3MXH|1|R|U|667
3MXH|1|R|C|668
3MXH|1|R|C|669
3MXH|1|R|G|75

Current chains

Chain R

c-di-GMP riboswitch

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A