HL_3O30_009

3D structure

PDB id

3O30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 40S subunit of the second 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

3O30|1|1|A|400, 3O30|1|1|C|402, 3O30|1|1|G|403

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72964.1

Basepair signature

Not available

Number of instances in this motif group

2

Unit IDs

3O30|1|1|C|393
3O30|1|1|C|394
3O30|1|1|U|395
3O30|1|1|G|396
3O30|1|1|A|397
3O30|1|1|G|398
3O30|1|1|A|399
3O30|1|1|A|400
3O30|1|1|A|401
3O30|1|1|C|402
3O30|1|1|G|403
3O30|1|1|G|404

Current chains

Chain 1

18S ribosomal RNA

Nearby chains