HL_3OKB_009

3D structure

PDB id

3OKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a bacterial RNase P holoenzyme in complex with tRNA and in the presence of 5' leader

Experimental method

X-RAY DIFFRACTION

Resolution

4.21 Å

Loop

Sequence

CAGGGAGUA*G

Length

10 nucleotides

Bulged bases

3OKB|1|C|G|18, 3OKB|1|C|G|19, 3OKB|1|C|U|20

QA status

Incomplete nucleotides: 13, 14, 15, 18, 19, 21, 22

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OKB_009 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.2684

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

3OKB|1|C|C|13
3OKB|1|C|A|14
3OKB|1|C|G|15
3OKB|1|C|G|18
3OKB|1|C|G|19
3OKB|1|C|A|21
3OKB|1|C|G|22
3OKB|1|C|U|20
3OKB|1|C|A|21
*
3OKB|1|C|G|22

Current chains

Chain C

tRNA (PHE)

Nearby chains

Chain B

Ribonuclease P class A; RNase P class A