HL_3OTO_008

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OTO_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0885

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3OTO|1|A|C|320
3OTO|1|A|A|321
3OTO|1|A|C|322
3OTO|1|A|U|323
3OTO|1|A|G|324
3OTO|1|A|A|325
3OTO|1|A|G|326
3OTO|1|A|A|327
3OTO|1|A|C|328
3OTO|1|A|A|329
3OTO|1|A|C|330
3OTO|1|A|G|331
3OTO|1|A|G|332
3OTO|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20