HL_3OTO_034

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OTO_034 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3377

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3OTO|1|A|G|1010
3OTO|1|A|G|1011
3OTO|1|A|U|1012
3OTO|1|A|G|1013
3OTO|1|A|A|1014
3OTO|1|A|A|1015
3OTO|1|A|A|1016
3OTO|1|A|G|1017
3OTO|1|A|C|1018
3OTO|1|A|C|1019

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14

Chain S

30S RIBOSOMAL PROTEIN S19