HL_3OXJ_006

3D structure

PDB id

3OXJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of glycine riboswitch, soaked in Ba2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

3OXJ|1|A|A|51||||4_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OXJ_006 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.0695

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

3OXJ|1|A|G|49||||4_555
3OXJ|1|A|G|50||||4_555
3OXJ|1|A|A|51||||4_555
3OXJ|1|A|A|52||||4_555
3OXJ|1|A|A|53||||4_555
3OXJ|1|A|C|54||||4_555

Current chains

Chain A

domain II of glycine riboswitch

Nearby chains