HL_3PIP_004

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_004 not in the Motif Atlas

Homologous match to HL_7A0S_004

Geometric discrepancy: 0.5884

The information below is about HL_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3PIP|1|X|C|133
3PIP|1|X|G|134
3PIP|1|X|U|135
3PIP|1|X|A|136
3PIP|1|X|A|137
3PIP|1|X|G|138

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29