HL_3PIP_007

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

3PIP|1|X|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_007 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.2168

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

3PIP|1|X|A|202
3PIP|1|X|G|203
3PIP|1|X|A|204
3PIP|1|X|A|205
3PIP|1|X|U|206
3PIP|1|X|U|207

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains