HL_3PIP_026

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGCUUAGAGCAGCC

Length

14 nucleotides

Bulged bases

3PIP|1|X|A|1081

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1073
3PIP|1|X|G|1074
3PIP|1|X|C|1075
3PIP|1|X|U|1076
3PIP|1|X|U|1077
3PIP|1|X|A|1078
3PIP|1|X|G|1079
3PIP|1|X|A|1081
3PIP|1|X|G|1082
3PIP|1|X|C|1083
3PIP|1|X|A|1084
3PIP|1|X|G|1085
3PIP|1|X|C|1086
3PIP|1|X|C|1087

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain F

50S ribosomal protein L11

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25