HL_3PIP_030

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AAGUGAGAAUCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_030 not in the Motif Atlas

Geometric match to HL_6ZDU_001

Geometric discrepancy: 0.39

The information below is about HL_6ZDU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99769.3

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3PIP|1|X|A|1292
3PIP|1|X|A|1293
3PIP|1|X|G|1294
3PIP|1|X|U|1295
3PIP|1|X|G|1296
3PIP|1|X|A|1297
3PIP|1|X|G|1298
3PIP|1|X|A|1299
3PIP|1|X|A|1300
3PIP|1|X|U|1301
3PIP|1|X|C|1302
3PIP|1|X|U|1303
3PIP|1|X|U|1304

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32