HL_3PIP_031

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

3PIP|1|X|G|1338, 3PIP|1|X|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_031 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.2207

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3PIP|1|X|G|1337
3PIP|1|X|G|1338
3PIP|1|X|U|1339
3PIP|1|X|C|1340
3PIP|1|X|G|1341
3PIP|1|X|U|1342
3PIP|1|X|C|1343

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22